Controller Malfunction on some emulation.

Hello there, I was not sure where exactly to post this so I hope its the right place.
I have a PS3 controller which I use to emulate for my Steam games and it works wonderful.
The problem is that the PC thinks its an XBOX controller so I had to first by-pass it to make it register as a 360 controller.
I used this video as a tutorial https://www.youtube.com/watch?v=_wsKT9YOiYo.

My problem is that any type of emulation I do through JoyToKey or similar programs like Pinacle I get the same problem which breaks
the controlls for me in a way.
Whenever I try to emulate controller for lets say FighCade or anything else UP,LEFT, and DOWN are locked pressed, like they are permanently pressed buttons.
Otherwise everything functions perfect, I can use the rest of the buttons its just that my character is infinately crouching and jumping to the left side on his own.
What can anyone here suggest to help me? ty

P.S Forgot to mention that only ANALOG sticks lock up, 3 directions on the left one and one on the right analog stick, if it helps.