When you click to set a button in controller settings and push a button on the gamepad, does it show it on there or does it do nothing and keep asking you to press a button to set? If so, it might be your gamepad drivers, make sure they are installed and showing in the Gaming Options - located in the Control Panel of Windows. See if it's says it's working correctly. If not, go into Controller Ids and also see if it's set as ID #1. Try this, still doesn't work, let me know.
Edit: If you can set your gamepad buttons, don't click "Set" or "Set Keys" buttons, resets your options to a keyboard. :P


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Let me know and see if I can help ya.
